Publications

O.L. Griffith, S.B. Montgomery et al., ORegAnno: an open-access community-driven resource for regulatory annotation, Nucleic Acids Research, January 2008 (IN PRESS, co-first authored)

B.E. Stranger et al., "Population genomics of human gene expression", Nature Genetics, September, 2007

S.B. Montgomery et al., "A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms", PLoS Computational Biology, Available through Advance Access, April 25th, 2007

S.B. Montgomery, O.L. Griffith et al., "ORegAnno: An open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation", Bioinformatics, March, 2006 (co-first authored)

A.G. Robertson, M. Bilenky et al., "cisRED: a database system for genome-scale computational discovery of regulatory elements", Nucleic Acids Research, January 2006

S.B. Montgomery et al., "An application of peer-to-peer technology to the discovery, use and assessment of bioinformatics programs", Nature Methods, August 2005

S.B.Montgomery et al., "Sockeye: A 3D Environment for Comparative Genomics", Genome Research, May. 2004

M.Marra et al., "The Genome Sequence of the SARS-Associated Coronavirus", Science, May 2003

Presentations / Posters / Abstracts

(Presentation/Poster) S.B. Montgomery et al., Identification of regulatory variation using Sockeye/Chinook, Encoding Information in DNA Sequences, 2005, Okinawa, Japan

(Poster/Abstract) S.B. Montgomery et al., A collaborative framework for regulatory element analysis, Identification of Functional Elements in Mammalian Genomes 2004, Cold Spring Harbour Laboratory, NY

(Poster/Abstract) S.B. Montgomery et al., A distributed, decentralized platform for bioinformatics analysis, Genetics Retreat 2004, Vancouver, BC

(Presentation) S.B. Montgomery et al., A distributed, decentralized platform for bioinfomatics analysis, VanBUG, Vancouver, BC

(Poster/Abstract) S.B. Montgomery et al., A distributed, decentralized platform for bioinformatics analysis, Genome Informatics 2004 (CSHL/EBI), Hinxton, UK

(Presentation) S.B. Montgomery et al., A distributed, decentralized platform for bioinfomatics analysis, BCNet Advanced Networks Conference 2004, Vancouver, BC

(Poster) M. Sleumer et al., Sockeye: A Platform for cis-regulatory element detection, GenomeBC Research Exchange 2004, Vancouver, BC

(Poster/Abstract) S.B. Montgomery et al., Chinook: P2P Bioinformatics Services, GenomeBC Research Exchange 2004, Vancouver, BC

(Poster/Abstract) S.B. Montgomery et al., Chinook: P2P Bioinformatics Services, 2nd Annual Canadian Gene Expression Conference, 2004, Vancouver, BC

(Abstract) S.J.M. Jones et al., Utility of large expression datasets from SAGE, Affymetrix, and cDNA microarrays for identifying genes under similar regulatory control, 2nd Annual Canadian Gene Expression Conference, 2004, Vancouver, BC

(Paper) S.B. Montgomery, Java APIs for Bioinformatics, O'Reilly Network, www.onjava.com, March. 2004

(Poster) S.J.M. Jones et al., Sockeye: A Platform for cis-regulatory element discovery, ASI Exchange 2004, Vancouver, BC

(Presentation) S.B. Montgomery et al., Identification of genetic variation affecting gene regulation. RIP Series, Vancouver, BC

(Poster) S.J.M. Jones et al., Sockeye: A Platform for cis-regulatory element discovery, Advances in Genome Biology and Technology 2004, Marco Island, Florida

(Presentation) S.B.Montgomery et al., Extreme Bioinformatics, BCCA Thursday Student Seminar Series. Dec 2003.

(Poster) BC Cancer Annual Conference 2003, Vancouver, BC: Chinook: P2P Bioinformatics Application Server

(Poster) M.S. Sleumer et al., Sockeye: A 3D Genome Visualization Platform for Gene Regulation Analysis, BC Cancer Annual Conference 2003, Vancouver, BC

(Poster) Genetics Grad Day 2003, Vancouver, BC: Chinook: P2P Bioinformatics Application Server

(Paper) S.B. Montgomery, Java and Bioinformatics, O'Reilly Network, www.onjava.com, Sept. 2003

M. Bilenky et al., Genome Informatics 2003, CSHL, USA: Sockeye: A 3D Approach to Multi-genome Visualization (Presentation of Sockeye by M. Bilenky)

(Poster) Systems Biology: Computational Approaches to Transcriptional Regulation 2003, CSHL, USA: Sockeye: Integrated
Software for Regulation Analysis

(Poster) BC Cancer Annual Conference 2002, Vancouver, BC: Mammalian Gene Expression Platform

(Poster) Genetics Grad Day 2002, Vancouver, BC: Mammalian Gene Expression Platform

(Presentation) EnsEMBL Developers Day 2002, Hinxton, UK: Mammalian Gene Expression Platform