[bwa_index] Pack FASTA... 36.93 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncCreate] textLength=6203609478, availableWord=448508744
[BWTIncConstructFromPacked] 10 iterations done. 99999990 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 199999990 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 299999990 characters processed.
[BWTIncConstructFromPacked] 40 iterations done. 399999990 characters processed.
[BWTIncConstructFromPacked] 50 iterations done. 499999990 characters processed.
[BWTIncConstructFromPacked] 60 iterations done. 599999990 characters processed.
[BWTIncConstructFromPacked] 70 iterations done. 699999990 characters processed.
[BWTIncConstructFromPacked] 80 iterations done. 799999990 characters processed.
[BWTIncConstructFromPacked] 90 iterations done. 899999990 characters processed.
[BWTIncConstructFromPacked] 100 iterations done. 999999990 characters processed.
[BWTIncConstructFromPacked] 110 iterations done. 1099999990 characters processed.
[BWTIncConstructFromPacked] 120 iterations done. 1199999990 characters processed.
[BWTIncConstructFromPacked] 130 iterations done. 1299999990 characters processed.
[BWTIncConstructFromPacked] 140 iterations done. 1399999990 characters processed.
[BWTIncConstructFromPacked] 150 iterations done. 1499999990 characters processed.
[BWTIncConstructFromPacked] 160 iterations done. 1599999990 characters processed.
[BWTIncConstructFromPacked] 170 iterations done. 1699999990 characters processed.
[BWTIncConstructFromPacked] 180 iterations done. 1799999990 characters processed.
[BWTIncConstructFromPacked] 190 iterations done. 1899999990 characters processed.
[BWTIncConstructFromPacked] 200 iterations done. 1999999990 characters processed.
[BWTIncConstructFromPacked] 210 iterations done. 2099999990 characters processed.
[BWTIncConstructFromPacked] 220 iterations done. 2199999990 characters processed.
[BWTIncConstructFromPacked] 230 iterations done. 2299999990 characters processed.
[BWTIncConstructFromPacked] 240 iterations done. 2399999990 characters processed.
[BWTIncConstructFromPacked] 250 iterations done. 2499999990 characters processed.
[BWTIncConstructFromPacked] 260 iterations done. 2599999990 characters processed.
[BWTIncConstructFromPacked] 270 iterations done. 2699999990 characters processed.
[BWTIncConstructFromPacked] 280 iterations done. 2799999990 characters processed.
[BWTIncConstructFromPacked] 290 iterations done. 2899999990 characters processed.
[BWTIncConstructFromPacked] 300 iterations done. 2999999990 characters processed.
[BWTIncConstructFromPacked] 310 iterations done. 3099999990 characters processed.
[BWTIncConstructFromPacked] 320 iterations done. 3199999990 characters processed.
[BWTIncConstructFromPacked] 330 iterations done. 3299999990 characters processed.
[BWTIncConstructFromPacked] 340 iterations done. 3399999990 characters processed.
[BWTIncConstructFromPacked] 350 iterations done. 3499999990 characters processed.
[BWTIncConstructFromPacked] 360 iterations done. 3599999990 characters processed.
[BWTIncConstructFromPacked] 370 iterations done. 3699999990 characters processed.
[BWTIncConstructFromPacked] 380 iterations done. 3799999990 characters processed.
[BWTIncConstructFromPacked] 390 iterations done. 3899999990 characters processed.
[BWTIncConstructFromPacked] 400 iterations done. 3999999990 characters processed.
[BWTIncConstructFromPacked] 410 iterations done. 4099999990 characters processed.
[BWTIncConstructFromPacked] 420 iterations done. 4199999990 characters processed.
[BWTIncConstructFromPacked] 430 iterations done. 4299999990 characters processed.
[BWTIncConstructFromPacked] 440 iterations done. 4399999990 characters processed.
[BWTIncConstructFromPacked] 450 iterations done. 4499999990 characters processed.
[BWTIncConstructFromPacked] 460 iterations done. 4599999990 characters processed.
[BWTIncConstructFromPacked] 470 iterations done. 4699999990 characters processed.
[BWTIncConstructFromPacked] 480 iterations done. 4799999990 characters processed.
[BWTIncConstructFromPacked] 490 iterations done. 4899999990 characters processed.
[BWTIncConstructFromPacked] 500 iterations done. 4999999990 characters processed.
[BWTIncConstructFromPacked] 510 iterations done. 5099999990 characters processed.
[BWTIncConstructFromPacked] 520 iterations done. 5199999990 characters processed.
[BWTIncConstructFromPacked] 530 iterations done. 5299999990 characters processed.
[BWTIncConstructFromPacked] 540 iterations done. 5399999990 characters processed.
[BWTIncConstructFromPacked] 550 iterations done. 5499999990 characters processed.
[BWTIncConstructFromPacked] 560 iterations done. 5597066646 characters processed.
[BWTIncConstructFromPacked] 570 iterations done. 5683763718 characters processed.
[BWTIncConstructFromPacked] 580 iterations done. 5760816294 characters processed.
[BWTIncConstructFromPacked] 590 iterations done. 5829296822 characters processed.
[BWTIncConstructFromPacked] 600 iterations done. 5890158470 characters processed.
[BWTIncConstructFromPacked] 610 iterations done. 5944248422 characters processed.
[BWTIncConstructFromPacked] 620 iterations done. 5992319702 characters processed.
[BWTIncConstructFromPacked] 630 iterations done. 6035041542 characters processed.
[BWTIncConstructFromPacked] 640 iterations done. 6073008822 characters processed.
[BWTIncConstructFromPacked] 650 iterations done. 6106750214 characters processed.
[BWTIncConstructFromPacked] 660 iterations done. 6136735590 characters processed.
[BWTIncConstructFromPacked] 670 iterations done. 6163382646 characters processed.
[BWTIncConstructFromPacked] 680 iterations done. 6187062566 characters processed.
[bwt_gen] Finished constructing BWT in 688 iterations.
[bwa_index] 4384.12 seconds elapse.
[bwa_index] Update BWT... 18.19 sec
[bwa_index] Pack forward-only FASTA... 23.05 sec
[bwa_index] Construct SA from BWT and Occ... 1395.01 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index genomes/grch37/bwa_index/bwa-0.7.17/genome.fa
[main] Real time: 5947.206 sec; CPU: 5857.308 sec