Nextflow workflow report

[reverent_galileo]

Run times

16-Nov-2024 14:55:49 - 18-Nov-2024 11:45:53 (duration: 1d 20h 50m 4s)

  124 succeeded  

  0 cached  

  0 ignored  

  0 failed  

Nextflow command

nextflow -bg run patmat_workflow.nf -with-report -with-conda -resume --reference /projects/vakbari_prj/hg38_no_alt/hg38_no_alt.fa --bam /projects/poaga/scratch/sdhd_cases/poa-0335_F147427/F147427_1_lane.bam --output /projects/vakbari_prj/scratch/POAGA/LongPhase_PatMat/SDHD_Cases/poa-0335_F147427 --ashleys_model /projects/vakbari_prj/GitHub/NewPatMat_PerChrom/PatMat/third_parties/ashleys-qc/models/svc_stringent.pkl --strandseq_fq /projects/poaga/external_strand_seq/poa-0335/fastq --processes 14 --sample_id poa-0335_F147427 --phasing_tool longphase --clair3 --clair3_model /projects/vakbari_prj/GitHub/NewPatMat_PerChrom/PatMat/third_parties/clair3_models/r1041_e82_400bps_sup_v420

CPU-Hours

118.1

Launch directory

/projects/vakbari_prj/scratch/POAGA/LongPhase_PatMat/SDHD_Cases/poa-0335_F147427

Work directory

/projects/vakbari_prj/scratch/POAGA/LongPhase_PatMat/SDHD_Cases/poa-0335_F147427/work

Project directory

/projects/vakbari_prj/scratch/POAGA/LongPhase_PatMat/SDHD_Cases/poa-0335_F147427

Script name

patmat_workflow.nf

Script ID

991569cc8c00023db2914de4c0ad4771

Workflow session

759bc4f7-e223-41ad-802c-1c21d56624fe

Workflow profile

standard

Nextflow version

version 24.04.4, build 5917 (01-08-2024 07:05 UTC)